plot_mean_var | R Documentation |
Plot the mean-variance relationship of transcripts as modeled in sleuth
. Each
dot represents a transcript. The blue dots represent the transcripts that
are used in the shrinkage estimation. The fitted curve represents the smooth fit.
plot_mean_var(obj, which_model = "full", point_alpha = 0.4, point_size = 2, point_colors = c("black", "dodgerblue"), smooth_alpha = 1, smooth_size = 0.75, smooth_color = "red")
obj |
a |
which_model |
which fit to use |
point_alpha |
the alpha (opacity) of the points (0, 1) |
point_size |
the size of the points |
smooth_alpha |
the alpha (opacity) of the line |
smooth_size |
the size of the line |
smooth_color |
the color of the smooth line |
The x-axis represents the mean expression of transcripts pooled across all samples. The y-axis represents the 'biological' variance after the technical variance has been removed.
a ggplot
object