R: Plot technical variance versus observed variance

plot_vars

R Documentation

Plot technical variance versus observed variance

Description

Plot technical variance versus observed variance

Usage

plot_vars(obj, test = NULL, test_type = "wt", which_model = "full",
  sig_level = 0.1, point_alpha = 0.2, sig_color = "red", xy_line = TRUE,
  xy_line_color = "red", highlight = NULL, highlight_color = "green")

Arguments

`obj`	a `sleuth` object
`test`	the name of the test to highlight significant transcripts for
`test_type`	either 'wt' for wald test or 'lrt' for likelihood ratio test
`which_model`	a character string denoting which model to use for the test
`point_alpha`	the alpha for the points
`xy_line`	if TRUE, plot the xy_line
`xy_line_color`	a string denoting the color for the xy line
`highlight`	a `data.frame` with one column, `target_id`. These points will be highlighted in the plot. if `NULL`, no points will be highlighted.
`highlight_color`	the color to highlight points.

Value

a ggplot2 object