R: Convert a sleuth object to matrix

sleuth_to_matrix

R Documentation

Convert a sleuth object to matrix

Convert a sleuth object to a matrix with the condition names.

sleuth_to_matrix(obj, which_df, which_units)

`obj`	a `sleuth` object
`which_df`	character vector of length one. Which type of data to use ("obs_norm" or "obs_raw")
`which_units`	character vector of length one. Which units to use ("tpm" or "est_counts")

a list with an attribute 'data', which contains a matrix of target_ids and transcript expression in which_units

sleuth_matrix <- sleuth_to_matrix(sleuth_obj, 'obs_norm', 'tpm')
head(sleuth_matrix$data) # look at first 5 transcripts, sorted by name