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Convert images to SpatRasterImage

Source: R/image.R
toSpatRasterImage.Rd

The resolution specified from the OME-TIFF file will be read into memory and written to disk as a GeoTIFF file that has the extent. The output file will have the same file name as the input file except without the ome in the extension.

Usage

# S4 method for class 'ExtImage'
toSpatRasterImage(
  x,
  save_geotiff = TRUE,
  file_out = "img.tiff",
  overwrite = FALSE
)

# S4 method for class 'BioFormatsImage'
toSpatRasterImage(
  x,
  save_geotiff = TRUE,
  resolution = 4L,
  channel = NULL,
  overwrite = FALSE
)

Arguments

x

Either a BioFormatsImage or EBIImage object.

save_geotiff

Logical, whether to save the image to GeoTIFF file.

file_out

File to save the non-OME TIFF file for SpatRaster.

overwrite

Logical, whether to overwrite existing file of the same name.

resolution

Integer, which resolution in the BioFormatsImage to read and convert. Defaults to 4, which is a lower resolution. Ignored if only 1 resolution is present.

channel

Integer vector to indicate channel(s) to read. If NULL, then all channels will be read.

Value

A SpatRasterImage object

See also

toExtImage