In SFE, S4 classes inheriting from VirtualSpatialImage
have been
implemented to make these image classes compatible with
SpatialExperiment
. The imgRaster
methods in SFE are meant to
extract the original image from the *Image
classes, such as
SpatRaster
from SpatRasterImage
, and Image
from
ExtImage
and BioFormatsImage
. For BioFormatsImage
, the
image of the specified resolution will be read into memory as
AnnotatedImage
, which inherits from EBImage::Image
.
Arguments
- x
An object of class
*Image
as implemented in this package.- resolution
Resolution to read in from OME-TIFF, defaults to 4, which is a medium resolution in Xenium.
Value
SpatRaster
from SpatRasterImage
, and Image
from
ExtImage
and BioFormatsImage
. For BioFormatsImage
, the
image of the specified resolution will be read into memory as
AnnotatedImage
and ExtImage
, which both inherit from
See also
Other image methods:
SFE-image
,
affineImg()
,
cropImg()
,
dim,BioFormatsImage-method
,
ext()
,
imgSource()
,
mirrorImg()
,
rotateImg()
,
scaleImg()
,
translateImg()
,
transposeImg()