Applications of kallisto and bustools

• Counting antibody derived tags Improving oligo-conjugated antibody signal in multimodal single-cell analysis
• RNA velocity from single-nuclei RNA-seq Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity
• Analysis of scATAC-seq Fast analysis of scATAC-seq data using a predefined set of genomic regions
• Multi-tech barcoding Building the Mega Single Cell Transcriptome Ocular Meta-Atlas
• Fully reproducible non-model organism cell type atlas Whole Animal Multiplexed Single-Cell RNA-Seq Reveals Plasticity of Clytia Medusa Cell Types
• SwabSeq Covid19 high-throughput sequencing based testing Reliable and accurate diagnostics from highly multiplexed sequencing assays
• Large-scale Covid19 scRNAseq based transcriptome atlas processing COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
• Isoform analysis of single-cell RNA-seq Isoform cell type specificity in the mouse primary motor cortex