This catalog lists the maintained assay examples in current `0.4.0` structure.
| Name | Assay | Sequencer | Modalities | Date | Report | seqspec |
|---|---|---|---|---|---|---|
| 10x-ATAC | 10xATAC | Illumina | atac | 19 October 2018 | view | yaml |
| 10x-RNA-5prime | 10xRNA5prime | Illumina | rna | 2016-08-01 | view | yaml |
| 10x-ATAC-RNA | 10xMultiome | Illumina NovaSeq 6000 | rna, atac | 15 September 2020 | view | yaml |
| 10x-ATAC-RNA-MULTI/Illumina | 10x-ATAC-RNA-MULTI | Illumina NovaSeq 6000 | rna, atac, tag | 17 June 2019 | view | yaml |
| 10x-RNA-v1 | 10xRNAv1 | Illumina | rna | 15 April 2016 | view | yaml |
| 10x-RNA-v2 | 10xRNAv2 | Illumina | rna | 16 January 2017 | view | yaml |
| 10x-RNA-v3 | 10xRNAv3 | Illumina NovaSeq 6000 | rna | — | view | yaml |
| 10xCRISPR | 10xCRISPR | Illumina | crispr, rna | 10 June 2020 | view | yaml |
| 10xFB-3prime | 10xFB protein and RNA assay 3' | Illumina | rna, protein | 12 February 2018 | view | yaml |
| 10xFB protein and RNA assay 5' | 10xFB protein and RNA assay 5' | Illumina | rna, protein | — | view | yaml |
| 10xFB-VDJ-5prime | 10xVDJ and RNA 5' | Illumina | rna, vdj | 21 October 2016 | view | yaml |
| 10xv3 scrnaseq element adept truseq dual | element-adept-truseq-dual-index | Element Aviti | rna | 21 February 2024 | view | yaml |
| 10xv3 scrnaseq illumina truseq dual | Illumina-novaseq-truseq-dual-index | Illumina NovaSeq 6000 | rna | 21 February 2024 | view | yaml |
| BD-Rhapsody-EB | BD-Rhapsody-EB | Illumina | rna | 31 August 2022 | view | yaml |
| BD-Rhapsody-v1/Illumina | BD-Rhapsody-v1 | Illumina | rna | 20 December 2018 | view | yaml |
| CEL-Seq | CEL-Seq | Illumina | rna | 30 August 2012 | view | yaml |
| CEL-Seq2/Illumina | CEL-Seq2 | Illumina | rna | 28 April 2016 | view | yaml |
| DOGMAseq-DIG/Illumina | DOGMAseq-DIG | Illumina NovaSeq 6000 (S2 Reagent Kit v1.5) | protein, tag, rna, atac | 23 June 2022 | view | yaml |
| DOGMAseq-LLL/Illumina | DOGMAseq-LLL | Illumina NovaSeq 6000 (S2 Reagent Kit v1.5) | protein, rna, atac | 23 June 2022 | view | yaml |
| Drop-seq/Illumina | Drop-seq | Illumina | rna | 21 May 2015 | view | yaml |
| inDropv2/Illumina | Indropv2 | Illumina | rna | 08 December 2016 | view | yaml |
| ISSAAC-seq | issaac_seq | — | RNA, ATAC | 15 September 2020 | view | yaml |
| MARS-seq | mars_seq | — | RNA | 17 May 2019 | view | yaml |
| mcSCRB-seq | mcscrb_seq | — | RNA | 26 July 2018 | view | yaml |
| Microwell-seq | microwell_seq | — | RNA | 22 February 2018 | view | yaml |
| WT Mega v2 | WT-Mega-v2 | Illumina | rna | — | view | yaml |
| Pi-ATAC-seq | pi_atac_seq | — | ATAC | 02 November 2018 | view | yaml |
| PIPseq V2 | pipseqv2 | — | RNA | 06 March 2023 | view | yaml |
| PIPseq V3 | pipseqv3 | — | RNA | 06 March 2023 | view | yaml |
| Quartz-seq | quartz_seq | — | RNA | 17 April 2013 | view | yaml |
| Quartz-seq2 | quartz_seq2 | — | RNA | 09 March 2018 | view | yaml |
| CRISPRa_screening | sccrispra | NextSeq2000 p3 kit | rna, crispr | 28 March 2023 | view | yaml |
| sci-RNA-seq | sci_rna_seq | — | RNA | 18 August 2017 | view | yaml |
| sci-RNA-seq3 | sci_rna_seq3 | — | RNA | 20 February 2019 | view | yaml |
| scifi-RNA-Seq | scifi_rna_seq | — | RNA | 31 May 2021 | view | yaml |
| Seq-well | seq_well | — | RNA | 13 February 2017 | view | yaml |
| Seq-Well-S3 | seq_well_s3 | — | RNA | 02 July 2019 | view | yaml |
| SHARE-Seq | SHARE-Seq | Illumina | atac, rna | 23 October 2020 | view | yaml |
| Smart-seq2 | smart_seq2 | — | RNA | 02 January 2014 | view | yaml |
| Smart-seq3 | smart_seq3 | — | RNA_end, RNA_internal | 04 May 2020 | view | yaml |
| sn-m3C-seq | sn-m3C-seq | Illumina NextSeq500 | methyl, hic | 09 September 2019 | view | yaml |
| snmCT-seq | snmCT-seq | Illumina NextSeq500 | methyl, rna | 09 March 2022 | view | yaml |
| SPLiT-seq | split_seq | — | RNA | 15 March 2018 | view | yaml |
| STRT-seq | strt_seq | — | RNA | 05 April 2012 | view | yaml |
| STRT-seq-2i | strt_seq_2i | — | RNA | 27 November 2017 | view | yaml |
| STRT-seq-C1 | strt_seq_c1 | — | RNA | 27 April 2019 | view | yaml |
| SugarSeq/Illumina | SugarSeq | Illumina NextSeq | rna, tag | — | view | yaml |
| SureCell | surecell | — | RNA | 27 April 2019 | view | yaml |
| 10x Genomics | tang2009 | — | RNA | 06 April 2009 | view | yaml |
| template | template | — | mode | — | view | yaml |
| VASA-seq-drop | vasa_seq_drop | — | RNA | 27 June 2022 | view | yaml |
| VASA-seq | vasa_seq_plate | — | RNA | 27 June 2022 | view | yaml |