| plot_ma | R Documentation |
Make an 'MA plot' for a given test. MA plots display, for each transcript, the mean of abundances across samples on the x-axis and fold change on the y-axis.
plot_ma(obj, test, test_type = "wt", which_model = "full", sig_level = 0.1, point_alpha = 0.2, sig_color = "red", highlight = NULL, highlight_color = "green")
obj |
a |
test |
the name of the test to highlight significant transcripts for |
test_type |
either 'wt' for wald test or 'lrt' for likelihood ratio test. NB: Currently only the wald test is supported. |
which_model |
a character string denoting which model to use for the test |
point_alpha |
the alpha for the points |
a ggplot2 object