src/library.h

#ifndef express_library_h
#define express_library_h

#include <vector>
#include "boost/shared_ptr.hpp"

struct Library {
  std::string in_file_name;
  std::string out_file_name;
  boost::shared_ptr<MapParser> map_parser;
  boost::shared_ptr<LengthDistribution> fld;
  boost::shared_ptr<MismatchTable> mismatch_table;
  boost::shared_ptr<BiasBoss> bias_table;
  boost::shared_ptr<TargetTable> targ_table;
  size_t n;
  double mass_n;
  Library() : n(1), mass_n(0) {};
};

class Librarian
{
  std::vector<Library> _libs;
  size_t _curr;

public:
  Librarian(size_t num_libs): _libs(num_libs), _curr(0) {}
  Library& operator[](size_t i) {
        assert(i < _libs.size());
        return _libs[i];
  }
  const Library& curr_lib() const { return _libs[_curr]; }
  void set_curr(size_t i) {
    assert (i < _libs.size());
    _curr = i;
  }
  size_t size() const { return _libs.size(); }
};

#endif