All functions

cache_timestamp()

Get the timestamp of the internal version of the metadata

cat_heatmap()

Plot heatmap to show relationship between two categorical variables

era_freqpoly()

Prequel vs current binned over time

geocode_address()

Geocode addresses and institutions with Google's API

geocode_city()

Get longitude and latitude of cities

geocode_inst_city()

Geocode institutions and cities

get_pubs_df()

Get data frame with one publication per row

hist_bool()

Plot histogram for each value of a logical variable

hist_bool_line()

Plot outlines of histogram for a logical variable

inst_words

List of institution words

lcm_abstracts

LCM abstracts from PubMed and bioRxiv search

lcm_city_gc

City geocodes of LCM literature

lcm_dfm2

Document term matrix of LCM abstracts

lcm_tokens

quanteda tokens for LCM abstracts

make_labs()

Construct plotmath labels for time lines

my_searchK()

Find the appropriate number of topics for stm

plot_ec()

Plot exclusivity vs. semantic coherence for different K's

plot_facets_color()

Color facet strips by a variable

plot_k_result()

Plot the metrics for each K tried

plot_timeline()

Plot time line with images and descriptions of each event

plot_topic_prop()

Plot expected topic proportion in the corpus

plot_topic_words()

Plot probability of each word in each topic

plot_wordcloud()

Plot word cloud for a column

pubs_on_map()

Plot number of publications at each location

pubs_per_capita()

Plot per capita data as choropleth or bar plot

pubs_per_cat()

Number of publications per category

pubs_per_year()

Number of publications per year

read_major_events()

Read the major events sheet

read_metadata()

Read the metadata from Google Sheets

sheet_fill

Color palette for sheets

species_cols

Color palette for species

stm_res

stm model of LCM abstracts

test_year_bool()

Test whether something is associated with time

unnest_cat()

Transform the sheet to have one species, method, or language per row

word_prop_scatter()

Compare word frequencies between current era and prequel