This catalog lists the maintained region templates used by the assay examples.
| Template | Regions | Region ids | Link |
|---|---|---|---|
| 10x5pv2.rgn.yaml | 4 | barcode, umi, 10x5pTSO, cDNA | yaml |
| 10x5pv3.rgn.yaml | 4 | barcode, umi, 10x5pTSO, cDNA | yaml |
| 10xv2.rgn.yaml | 3 | barcode, umi, cDNA | yaml |
| 10xv3-CRISPR.rgn.yaml | 7 | barcode, umi, linker, sgRNA-scaffold, antibody_barcode, linker-2, tso | yaml |
| 10xv3-FB.rgn.yaml | 6 | barcode, umi, linker, random-1, antibody_barcode, random-2 | yaml |
| 10xv3.rgn.yaml | 3 | barcode, umi, cDNA | yaml |
| 10xv4.rgn.yaml | 3 | barcode, umi, cDNA | yaml |
| barcode.rgn.yaml | 1 | barcode | yaml |
| bd_rhapsody_eb.rgn.yaml | 8 | bd_eb_vb, bd_cls1, bd_eb_cls_linker1, bd_cls2, bd_eb_cls_linker2, bd_cls3, umi, cDNA | yaml |
| bd_rhapsody_v1.rgn.yaml | 7 | bd_cls1, bd_cls_linker1, bd_cls2, bd_cls_linker2, bd_cls3, umi, cDNA | yaml |
| cdna.rgn.yaml | 1 | cDNA | yaml |
| celseq.rgn.yaml | 2 | barcode, cDNA | yaml |
| celseq2.rgn.yaml | 3 | umi, barcode, cDNA | yaml |
| citeseq.yaml | 3 | protein_cell_bc, protein_umi, protein_seq | yaml |
| dropseq.rgn.yaml | 3 | dropseq_barcode, umi, cDNA | yaml |
| dropseq_seqa_r1.rgn.yaml | 1 | dropseq_seqA_read1 | yaml |
| dropseq_seqb_r1.rgn.yaml | 1 | dropseq_seqB_read1 | yaml |
| fipresci.rgn.yaml | 6 | barcode, umi, 10x5pTSO, cDNA, ME2, tn5_barcode | yaml |
| flashseq.rgn.yaml | 4 | linker-1, umi, linker-2, cDNA | yaml |
| gdna.rgn.yaml | 1 | gDNA | yaml |
| hydroprna.rgn.yaml | 7 | cDNA, umi, hydroprna_bc3, hydroprna_linker2, hydroprna_bc2, hydroprna_linker1, hydroprna_bc1 | yaml |
| illumina_index.rgn.yaml | 1 | index | yaml |
| illumina_p5.rgn.yaml | 1 | illumina_p5 | yaml |
| illumina_p7.rgn.yaml | 1 | illumina_p7 | yaml |
| marsseq2.rgn.yaml | 5 | marsseq2_platebarcode_linker, marsseq2_platebarcode, cDNA, umi, marsseq2_rt1_barcode | yaml |
| mcscrbseq.rgn.yaml | 3 | mcscrb_barcode, umi, cDNA | yaml |
| microwellseq.rgn.yaml | 7 | microwellseq_bc1, microwellseq_linker1, microwellseq_bc2, microwellseq_linker2, microwellseq_bc3, umi, cDNA | yaml |
| nextera_r1.rgn.yaml | 1 | nextera_read1 | yaml |
| nextera_r1_joined.rgn.yaml | 1 | nextera_read1 | yaml |
| nextera_r2.rgn.yaml | 1 | nextera_read2 | yaml |
| nextera_r2_joined.rgn.yaml | 1 | nextera_read2 | yaml |
| petriseq.rgn.yaml | 7 | umi, petriseq_bc3, petriseq_linker3, petriseq_bc2, petriseq_linker2, petriseq_bc1, cDNA | yaml |
| pipseqv2.rgn.yaml | 7 | pipseq_v2_bc1, pipseq_v2_linker1, pipseq_v2_bc2, pipseq_v2_linker2, pipseq_v2_bc3, umi, cDNA | yaml |
| pipseqv3.rgn.yaml | 9 | pipseq_v3_bc1, pipseq_v3_linker1, pipseq_v3_bc2, pipseq_v3_linker2, pipseq_v3_bc3, pipseq_v3_linker3, pipseq_v3_bc4, umi, cDNA | yaml |
| pipseqv4.rgn.yaml | 10 | pipseq_v4_vb, pipseq_v3_bc1, pipseq_v3_linker1, pipseq_v3_bc2, pipseq_v3_linker2, pipseq_v3_bc3, pipseq_v3_linker3, pipseq_v3_bc4, umi, cDNA | yaml |
| quartzseq.rgn.yaml | 3 | barcode, umi, cDNA | yaml |
| scirnaseq.rgn.yaml | 10 | i5_barcode, truseq_adapter, hairpin_barcode, linker, umi, rt_barcode, cdna, me, s7, i7_barcode | yaml |
| smartseq2.rgn.yaml | 1 | cDNA | yaml |
| smartseq3-express.rgn.yaml | 4 | linker-1, umi, linker-2, cDNA | yaml |
| smartseq3.rgn.yaml | 4 | linker-1, umi, linker-2, cDNA | yaml |
| strtseq.rgn.yaml | 8 | well-barcode, linker-1, umi, linker-2, cDNA, ME, linker-3, subarray-barcode | yaml |
| surecell_3p_wta.yaml | 9 | surecell_3p_wta_bc1, surecell_3p_wta_linker1, surecell_3p_wta_bc2, surecell_3p_wta_linker2, surecell_3p_wta_bc3, surecell_3p_wta_linker3, umi, surecell_3p_wta_linker4, cDNA | yaml |
| truseq_r1.rgn.yaml | 1 | truseq_read1 | yaml |
| truseq_r2.rgn.yaml | 1 | truseq_read2 | yaml |
| umi.rgn.yaml | 1 | umi | yaml |