17 November 2018

Changes from v0.44.0


kallisto can now process raw FASTQ files for single cell RNA-Seq and create an output in BUS format which can be further processed using bustools

To process single cell data run kallisto with the bus command. To see a list of supported technologies, run with the --list option

> kallisto bus --list 
List of supported single cell technologies

short name       description
----------       -----------
10Xv1            10X chemistry version 1
10Xv2            10X chemistry verison 2
DropSeq          DropSeq
inDrop           inDrop
CELSeq           CEL-Seq
CELSeq2          CEL-Seq version 2
SCRBSeq          SCRB-Seq