kallisto
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Apps

The following applications build on kallisto:

  • ARCHS4: Massive Mining of Publicly Available RNA-seq Data from Human and Mouse using kallisto

  • arkas: rapid and reproducible RNA-Seq analysis for end users

  • DEE2: Digital Expression Explorer 2

  • Differential analysis of RNA-Seq with sleuth

  • elysium : RNA-seq alignment in the cloud

  • EndoDB : a database of endothelial cell transcriptomics data

  • Google Cloud Pilot RNA Sequencing for CCLE and TCGA

  • kallisto-sra : Nextflow implementation of kallisto RNA-Seq Tools fetching samples directly from SRA

  • metaR: utilizing the Language Workbench Technology to facilitate data analysis in R

  • MiPanda : Michigan Portal for the Analysis of NGS Data

  • kallisto | bustools: Single-cell RNA-seq pre-processing

  • SkeletalVis : exploration of skeletal biology related expression datasets

  • The Lair: interactive (re)analysis of published RNA-Seq data with kallisto and sleuth

  • Toil based kallisto quantifications of GTEx and TCGA PANCAN RNA-Seq

  • Wheat expression browser : kallisto based quantifications for wheat from RH Ramirez-Gonzalez, P Borrill et al., 2018.


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