MismatchTable Member List

This is the complete list of members for MismatchTable, including all inherited members.

activate(bool active=true)	MismatchTable	[inline]
append_output(std::ofstream &outfile) const	MismatchTable
fix()	MismatchTable
get_indices(const FragHit &f, std::vector< char > &left_indices, std::vector< char > &left_seq, std::vector< char > &left_ref, std::vector< char > &right_indices, std::vector< char > &right_seq, std::vector< char > &right_ref) const	MismatchTable
log_likelihood(const FragHit &f) const	MismatchTable
MismatchTable(double alpha)	MismatchTable
MismatchTable(std::string param_file_name)	MismatchTable
update(const FragHit &, double p, double mass)	MismatchTable