Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• BiasBoss
• Bundle
• BundleTable
• CovarTable
• DirectionDetector
• FragHit
• Fragment
• FrequencyMatrix< T >
• HaplotypeHandler
• HitParams
• Indel
• LengthDistribution
• Librarian
• Library
• Logger
• MapParser
• MarkovModel
• MismatchTable
• Parser
  • BAMParser
  • SAMParser
• ParseThreadSafety
• ReadHit
• Result
• RobertsFilter
• RoundParams
• Sequence
  • SequenceFwd
  • SequenceRev
• SeqWeightTable
• Target
• TargetTable
• ThreadSafeFragQueue
• Writer
  • BAMWriter
  • SAMWriter