Sequence Member List

This is the complete list of members for Sequence, including all inherited members.

calc_p_vals(std::vector< double > &p_vals) const =0	Sequence	[pure virtual]
empty() const =0	Sequence	[pure virtual]
get_exp(const size_t index, const size_t nuc) const =0	Sequence	[pure virtual]
get_obs(const size_t index, const size_t nuc) const =0	Sequence	[pure virtual]
get_prob(const size_t index, const size_t nuc) const =0	Sequence	[pure virtual]
get_ref(const size_t index) const =0	Sequence	[pure virtual]
length() const =0	Sequence	[pure virtual]
operator[](const size_t index) const =0	Sequence	[pure virtual]
prob() const =0	Sequence	[pure virtual]
Sequence()	Sequence	[inline]
serialize()	Sequence
set(const std::string &seq, bool rev)=0	Sequence	[pure virtual]
update_est(const size_t index, const size_t nuc, float mass)=0	Sequence	[pure virtual]
update_exp(const size_t index, const size_t nuc, float mass)=0	Sequence	[pure virtual]
update_obs(const size_t index, const size_t nuc, float mass)=0	Sequence	[pure virtual]
~Sequence()	Sequence	[inline, virtual]