Target Member List

This is the complete list of members for Target, including all inherited members.

add_hit(const FragHit &h, double v, double mass)	Target
align_likelihood(const FragHit &frag) const	Target
alpha(double alpha)	Target	[inline]
bundle() const	Target	[inline]
bundle(Bundle *b)	Target	[inline]
cached_effective_length(bool with_bias=true) const	Target
est_effective_length(const LengthDistribution *fld=NULL, bool with_bias=true) const	Target
haplotype(boost::shared_ptr< HaplotypeHandler > hh)	Target	[inline]
HaplotypeHandler (defined in Target)	Target	[friend]
id() const	Target	[inline]
incr_counts(bool uniq, size_t incr_amt=1)	Target	[inline]
length() const	Target	[inline]
lock() const	Target	[inline]
mass(bool with_pseudo=true) const	Target
mass_var() const	Target
name() const	Target	[inline]
rho() const	Target
round_reset()	Target
sample_likelihood(bool with_pseudo, const std::vector< const Target * > *neighbors=NULL) const	Target
seq(bool rev=false) const	Target	[inline]
seq(bool rev)	Target	[inline]
solvable() const	Target	[inline]
solvable(bool s)	Target	[inline]
swap_bias_parameters()	Target
Target(TargID id, const std::string &name, const std::string &seq, bool prob_seq, double alpha, const Librarian *libs, const BiasBoss *known_bias_boss, const LengthDistribution *known_fld)	Target
TargetTable (defined in Target)	Target	[friend]
tot_ambig_mass() const	Target	[inline]
tot_counts() const	Target	[inline]
uniq_counts() const	Target	[inline]
unlock() const	Target	[inline]
update_target_bias_buffer(const BiasBoss *bias_table=NULL, const LengthDistribution *fld=NULL)	Target
var_sum() const	Target	[inline]