Users that are intersted in using the Python implementation of Voyager should reference the VoyagerPy website.
To install the release version of Voyager from Bioconductor, make sure that your Bioconductor installation is version 3.16 or higher (this requires R version 4.2 or higher).
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install(version = "release") # Or a higher version in the future
BiocManager::install("Voyager")While Voyager itself does not require compilation, some of its
dependencies, such as sf, must be
compiled, and in turn rely on system dependencies. See the Installation page of
sf for instructions on how to install the system
dependencies.
The main branch on GitHub is the release version. The
development version of Voyager can be installed from Bioconductor
BiocManager::install("Voyager", version = "devel")or directly from GitHub, from the devel branch:
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("pachterlab/voyager", ref = "devel")