This website houses a database providing interactive access to the (re)analysis of publicly available RNA-Seq data presented in published papers. The resource is powered by kallisto, sleuth, the Snakemake workflow management system and the Shiny web application framework. GitHub repositories with the source code for the project are located at bears_analyses and lair.

The Analyses page contains a list of papers and links to their sleuth-based analysis sites. Each data set in each publication is processed according to a meta-data file located at bears_analysis with data automatically downloaded from the Short Read Archive. The infrastructure underlying the website is shown in the following workflow:

This project was developed by Harold Pimentel, Pascal Sturmfels and Lior Pachter with help from the Pachter Lab.