V0.42.2
09 June 2015
This is version 0.42.2 of Kallisto.
Updates include
index
- the index has been updated to include more of the transcript information
- indices should be slightly smaller than before
- indices constructed with previous versions will not work with this version, rerun your index command
quant
- Bootstraps can be run in multithreaded mode, use option
-t
to specify number of threads - If only one read of a paired end maps,
kallisto
will check the transcript positions to discard reads that would go outside of transcript given the mean fragment length. - Pseudobam. Pseudoalignments can now be output in SAM format to standard output. For more details on the output see pseudobam
- Sequence specific bias.
kallisto
can learn a model for sequence specific bias and correct the abundances accordingly. - TSV. All output text files have been changed to
.tsv
ending.
- Bootstraps can be run in multithreaded mode, use option