The sleuth package consists of the commands listed below. Click to see the help or type help(package="sleuth") in R.
help(package="sleuth")
basic_filter
$<-.sleuth
design_matrix
excluded_ids
extract_model
get_bootstraps
get_bootstrap_summary
get_col
is_kallisto_subset
kallisto_table
log_transform
models
norm_factors
plot_bootstrap
plot_fld.kallisto
plot_fld.sleuth
plot_group_density
plot_loadings
plot_ma
plot_mean_var
plot_pca
plot_pc_variance
plot_qq
plot_sample_density
plot_sample_heatmap
plot_scatter
plot_transcript_heatmap
plot_vars
plot_volcano
print.sleuth_model
read_kallisto_h5
read_kallisto
read_kallisto_tsv
sleuth_deploy
sleuth_fit
sleuth_gene_table
sleuth_live
sleuth_live_settings
sleuth_load
sleuth_lrt
sleuth_prep
sleuth_results
sleuth_save
sleuth_to_matrix
sleuth_wt
subset_kallisto
transcripts_from_gene
transform_fun_counts$<-
transform_fun_tpm$<-
transform_status
write_kallisto_hdf5