- s -

• SAMParser() : SAMParser
• sample_hit() : Fragment
• sample_likelihood() : Target
• SAMWriter() : SAMWriter
• second_read() : FragHit
• seq() : Target
• seq_prob() : MarkovModel
• Sequence() : Sequence
• SequenceFwd() : SequenceFwd
• SeqWeightTable() : SeqWeightTable
• serialize() : Sequence
• set() : Sequence , SequenceFwd , SequenceRev
• set_curr() : Librarian
• set_logged() : FrequencyMatrix< T >
• size() : CovarTable , TargetTable , Librarian , Bundle , BundleTable
• solvable() : Target
• sort_hits() : Fragment
• sum() : FrequencyMatrix< T >
• swap_bias_parameters() : Target