Python arguments are equivalent to long-option arguments (--arg), unless otherwise specified. Flags are True/False arguments in Python. The manual for any gget tool can be called from the command-line using the -h --help flag.

gget setup 🔧

Function to install/download third-party dependencies for a specified gget module.

Positional argument
module
gget module for which dependencies should be installed.

Optional arguments
-o --out
Path to the folder downloaded files will be saved in (currently only applies to module = 'elm').
NOTE: Do NOT use this argument when downloading the files for use with gget.elm.
Default: None (downloaded files are saved inside the gget package installation folder).

Flags
-q --quiet
Command-line only. Prevents progress information from being displayed.
Python: Use verbose=False to prevent progress information from being displayed.

Example

gget setup alphafold

# Python
gget.setup("alphafold")

→ Installs all (modified) third-party dependencies and downloads model parameters (~4GB) required to run gget alphafold.